You may want to trigger your own macro/job/process (e.g. copying the uploaded data from one sheet to the other) after a runSHUTTLE run completes. You can also run a query using querySHUTTLE, execute some other processes after that and finally upload the data back into SAP through runSHUTTLE, all using a single macro.
To achieve this, you would need to create a macro for running the TxR and use a wait process to execute your own job after the script run completes.
An excel file with the sample code can be downloaded from here: Download sample VBA code